PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448767.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 504aa    MW: 55039.4 Da    PI: 9.0317
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.5e-0688110123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k F+r  nL+ H r H
  XP_016448767.1  88 FFCEICNKGFKRDQNLQLHRRGH 110
                     67*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-587110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.11E-587110No hitNo description
PROSITE profilePS5015710.74188110IPR007087Zinc finger, C2H2
PfamPF121718.3E-688110IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02188110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SMARTSM00355120130160IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.11E-5160180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MMNIHQKQQH VHIVEENMSN LTSASGEASI SASSNMNDTT TGGIFIPQNQ NPHHQQQIKK  60
KRNQAGNPDP EAEVIALSPK TLLATNRFFC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT  120
NKEVIRKKVY VCPERSCVHH DASRALGDLT GIKKHFSRKH GEKKWKCEKC SKRYAVQSDC  180
KALSKTCGTR EYRCECGTLF SRRDSFITHR AFCDTLAVES ARSAITGGNP IISFPSQAAG  240
SSSTSHMNQL QFQTPQYFNS HEFPASAAFS MKKEQPSHDF NVLRHYTEIP QWLMTCQPFV  300
GAGPGPPSSP AGFSSSVFQA TRLDQEYTQS HQDLTSTDFH DNPNPNFGGE AAVSPHISAT  360
ALLQKAAELS ATMSNKANSV SASSPAHSTG PAAILMRQSP HQTHVSVTTD SAAAAGSKQI  420
DQFGLNLSAR EFELTNSTGL INTLGNSYGN KVAAATVPSF SFANAAGFEG STFVDAFGGF  480
GTLNSKKDND FNGTTLLDPR NPLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114127KLKQRTNKEVIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX823281e-164X82328.1 S.tuberosum mRNA for DNA/RNA binding protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448767.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-117IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM0ZR951e-173M0ZR95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063851e-172(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-108indeterminate(ID)-domain 7